STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kduI4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (279 aa)    
Predicted Functional Partners:
Celf_3344
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cai:Caci_4949 short-chain dehydrogenase/reductase SDR.
 
 0.990
Celf_3348
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: kra:Krad_0195 tripartite ATP-independent periplasmic transporter DctQ component.
 
     0.817
Celf_3347
KEGG: kra:Krad_0196 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.
 
     0.795
Celf_1506
KEGG: signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; Belongs to the peptidase S26 family.
   
    0.784
Celf_3345
KEGG: kra:Krad_0198 transcriptional regulator IclR; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR.
 
   
 0.746
Celf_3349
KEGG: kra:Krad_0194 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7.
 
   
 0.744
Celf_0388
PFAM: regulatory protein TetR; KEGG: ami:Amir_3979 transcriptional regulator, TetR family.
   
    0.734
Celf_3292
KEGG: glucuronate isomerase; PFAM: Glucuronate isomerase.
 
  
 0.661
lspA
Peptidase A8 signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
      
 0.549
Celf_3287
KEGG: altronate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein.
 
  
 0.543
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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