STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_3402KEGG: ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase. (355 aa)    
Predicted Functional Partners:
Celf_3401
PFAM: ABC-2 type transporter; KEGG: ABC-2 type transporter.
 
    0.949
Celf_3405
KEGG: transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.
  
    0.585
Celf_3749
PFAM: ABC-2 type transporter; KEGG: cwo:Cwoe_0966 ABC-2 type transporter.
 
    0.566
Celf_3404
KEGG: ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
    
0.564
Celf_2709
PFAM: ABC-2 type transporter; KEGG: ABC-2 type transporter.
  
 0.538
Celf_3403
KEGG: hypothetical protein.
       0.526
Celf_2930
ABC transporter related protein; KEGG: hch:HCH_06448 lysophospholipase L1 biosynthesis ABC transporter ATPase; PFAM: ABC transporter related; SMART: AAA ATPase.
  
     0.480
Celf_3406
PFAM: FAD linked oxidase domain protein; Luciferase-like, subgroup; KEGG: putative F420-dependent oxidoreductase.
 
     0.447
Celf_0880
PFAM: ABC-2 type transporter; KEGG: xce:Xcel_0418 ABC-2 type transporter.
  
 0.430
Celf_3208
PFAM: ABC-2 type transporter; KEGG: cwo:Cwoe_5654 ABC-2 type transporter.
  
 0.410
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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