STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_3464PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: ErfK/YbiS/YcfS/YnhG family protein. (321 aa)    
Predicted Functional Partners:
Celf_0555
KEGG: D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C.
     
 0.569
Celf_3465
KEGG: phosphoesterase PA-phosphatase related protein; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related.
  
    0.563
Celf_3463
PFAM: flavin reductase domain protein FMN-binding; KEGG: flavin reductase domain protein FMN-binding protein.
       0.481
Celf_3462
PFAM: NADPH-dependent FMN reductase; KEGG: NADPH-dependent FMN reductase.
       0.476
Celf_3466
KEGG: phosphoesterase PA-phosphatase related protein; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related.
  
    0.462
Celf_3460
KEGG: AAA ATPase central domain protein; PFAM: AAA ATPase central domain protein; peptidase M41; SMART: AAA ATPase; Belongs to the AAA ATPase family.
 
     0.445
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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