STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_3474Transcriptional regulator, LacI family; Manually curated; PFAM: regulatory protein LacI; KEGG: scb:SCAB_86541 putative LacI family transcriptional regulator; SMART: regulatory protein LacI. (343 aa)    
Predicted Functional Partners:
Celf_2976
Transcriptional regulator, LacI family; KEGG: bfa:Bfae_28330 transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.
  
     0.775
Celf_2771
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bcv:Bcav_0036 periplasmic binding protein/LacI transcriptional regulator.
  
     0.765
Celf_0856
KEGG: ami:Amir_2923 regulatory protein DeoR; PFAM: regulatory protein DeoR; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein DeoR.
  
     0.760
Celf_1811
KEGG: glutamate synthase (ferredoxin); PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein.
    
 
 0.652
Celf_3473
PFAM: major facilitator superfamily MFS_1; KEGG: aau:AAur_pTC20156 putative sugar transporter.
     
 0.559
Celf_3472
PFAM: glycoside hydrolase family 3 domain protein; KEGG: rpc:RPC_1611 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 3 family.
       0.546
Celf_1927
Diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; periplasmic binding protein/LacI transcriptional regulator; GGDEF domain containing protein; KEGG: diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein.
  
     0.448
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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