STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_3486PFAM: NAD-dependent epimerase/dehydratase; KEGG: nml:Namu_0585 NAD-dependent epimerase/dehydratase. (221 aa)    
Predicted Functional Partners:
Celf_2579
PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; KEGG: mlu:Mlut_02710 pyruvate dehydrogenase (cytochrome); Belongs to the TPP enzyme family.
  
    0.786
Celf_3614
PFAM: GCN5-related N-acetyltransferase; KEGG: fre:Franean1_1973 acetyltransferase-like protein.
   
    0.626
Celf_0489
PFAM: permease; KEGG: nml:Namu_2555 permease.
   
    0.610
Celf_0484
PFAM: bifunctional deaminase-reductase domain protein; KEGG: sen:SACE_6341 deaminase-reductase domain-containing protein.
 
    0.525
Celf_1187
PFAM: CsbD family protein; KEGG: sro:Sros_3380 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
   
    0.447
arcA
KEGG: sco:SCO0613 arginine deiminase; PFAM: amidinotransferase.
   
    0.447
Celf_2212
PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: NAD-dependent epimerase/dehydratase.
   
    0.447
Celf_1137
KEGG: 3-demethylubiquinone-9 3-methyltransferase.
   
    0.443
Celf_3645
KEGG: rer:pREL1_0155 ArsR family transcriptional regulator; PFAM: Protein-tyrosine phosphatase, low molecular weight; regulatory protein ArsR; SMART: Protein-tyrosine phosphatase, low molecular weight; regulatory protein ArsR.
 
    0.434
Celf_2055
KEGG: hoh:Hoch_2993 NmrA family protein.
 
    0.423
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.