STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_3489PFAM: aminoglycoside phosphotransferase; KEGG: Mn2+dependent serine/threonine protein kinase. (289 aa)    
Predicted Functional Partners:
Celf_2790
PFAM: extracellular solute-binding protein family 1; KEGG: ABC-type sugar transport system, periplasmic component.
  
     0.587
Celf_0109
KEGG: hypothetical protein.
  
     0.583
Celf_0347
PFAM: alpha/beta hydrolase fold; KEGG: bcv:Bcav_2566 hypothetical protein.
  
     0.563
Celf_1178
KEGG: nucleoside-diphosphate-sugar epimerase.
  
     0.559
Celf_2875
PFAM: aminoglycoside phosphotransferase; KEGG: bcv:Bcav_2954 aminoglycoside phosphotransferase.
 
     0.551
Celf_3488
KEGG: hypothetical protein.
       0.479
Celf_1063
Regulatory protein MarR; KEGG: bcv:Bcav_0501 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.
  
     0.470
Celf_2936
PFAM: protein of unknown function DUF214; KEGG: protein of unknown function DUF214.
  
     0.455
Celf_1535
PFAM: regulatory protein TetR; KEGG: rha:RHA1_ro06635 TetR family transcriptional regulator.
  
     0.448
Celf_2789
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ABC-type polysaccharide transport system, permease component.
  
     0.440
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.