STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_3506KEGG: lma:LmjF35.0290 hypothetical protein. (751 aa)    
Predicted Functional Partners:
Celf_3088
KEGG: hypothetical protein.
  
     0.763
Celf_2164
KEGG: hypothetical protein.
  
     0.750
Celf_2378
PFAM: metallophosphoesterase; KEGG: metallophosphoesterase.
  
     0.747
Celf_2777
PFAM: Apolipoprotein A1/A4/E; KEGG: hypothetical protein.
  
     0.741
Celf_2881
KEGG: putative transmembrane anti-sigma factor.
  
     0.731
Celf_0547
KEGG: hypothetical protein.
  
     0.728
Celf_0021
KEGG: hypothetical protein.
  
     0.722
Celf_3239
Putative PAS/PAC sensor protein; KEGG: protein serine/threonine phosphatase; PFAM: Stage II sporulation protein E; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; SMART: protein phosphatase 2C domain protein.
  
     0.700
Celf_2277
KEGG: hypothetical protein.
  
     0.696
Celf_0261
KEGG: hypothetical protein.
  
     0.689
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.