STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_3509PFAM: regulatory protein TetR; KEGG: kfl:Kfla_0466 transcriptional regulator, TetR family. (220 aa)    
Predicted Functional Partners:
Celf_3507
KEGG: rha:RHA1_ro01446 anibiotic ABC transporter efflux pump.
 
  
 0.915
Celf_3508
KEGG: bcv:Bcav_0537 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
   
 0.832
Celf_0815
KEGG: mva:Mvan_0859 hypothetical protein.
  
     0.607
Celf_3506
KEGG: lma:LmjF35.0290 hypothetical protein.
       0.584
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.558
Celf_2883
PFAM: O-methyltransferase family 3; KEGG: O-methyltransferase family 3.
     
 0.477
Celf_0632
KEGG: hypothetical protein.
  
     0.429
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.