Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Celf_2055 | Celf_3543 | KEGG: hoh:Hoch_2993 NmrA family protein. | Hypothetical protein; Manually curated; KEGG: sil:SPO3605 hypothetical protein. | 0.405 |
Celf_3543 | Celf_2055 | Hypothetical protein; Manually curated; KEGG: sil:SPO3605 hypothetical protein. | KEGG: hoh:Hoch_2993 NmrA family protein. | 0.405 |
Celf_3543 | Celf_3544 | Hypothetical protein; Manually curated; KEGG: sil:SPO3605 hypothetical protein. | KEGG: bcv:Bcav_1919 hypothetical protein. | 0.773 |
Celf_3543 | Celf_3545 | Hypothetical protein; Manually curated; KEGG: sil:SPO3605 hypothetical protein. | Glycogen/starch/alpha-glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties. | 0.463 |
Celf_3544 | Celf_3543 | KEGG: bcv:Bcav_1919 hypothetical protein. | Hypothetical protein; Manually curated; KEGG: sil:SPO3605 hypothetical protein. | 0.773 |
Celf_3544 | Celf_3545 | KEGG: bcv:Bcav_1919 hypothetical protein. | Glycogen/starch/alpha-glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties. | 0.463 |
Celf_3545 | Celf_3543 | Glycogen/starch/alpha-glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties. | Hypothetical protein; Manually curated; KEGG: sil:SPO3605 hypothetical protein. | 0.463 |
Celf_3545 | Celf_3544 | Glycogen/starch/alpha-glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties. | KEGG: bcv:Bcav_1919 hypothetical protein. | 0.463 |