STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_3608PFAM: glycosyl transferase family 2; KEGG: glycosyl transferase family 2. (285 aa)    
Predicted Functional Partners:
Celf_1680
KEGG: hypothetical protein.
 
  
 0.792
Celf_1678
PFAM: Thiamin pyrophosphokinase catalytic domain-containing protein; KEGG: thiamin pyrophosphokinase catalytic region.
 
     0.782
Celf_1957
KEGG: protein of unknown function DUF952.
 
     0.782
Celf_3607
KEGG: bcv:Bcav_0376 hypothetical protein.
     0.777
Celf_1679
KEGG: hypothetical protein.
 
     0.769
Celf_3609
KEGG: hypothetical protein.
       0.698
Celf_1681
PFAM: virulence factor MVIN family protein; KEGG: virulence factor MviN family protein.
 
   
 0.695
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
  
 
 0.664
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
      
 0.654
Celf_2889
KEGG: succinyl-diaminopimelate desuccinylase; TIGRFAM: succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein.
  
 
 0.635
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.