STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_3653Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: rxy:Rxyl_2783 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein. (1095 aa)    
Predicted Functional Partners:
Celf_1558
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; KEGG: diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein.
 
 
0.982
Celf_3584
Protein serine phosphatase with GAF(s) sensor(s); KEGG: cmi:CMM_2257 putative protein kinase/phosphatase regulator hybrid protein; PFAM: Stage II sporulation protein E; GAF domain protein; SMART: protein phosphatase 2C domain protein; GAF domain protein.
 
 0.967
Celf_2724
TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein.
 
 
0.873
Celf_1927
Diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; periplasmic binding protein/LacI transcriptional regulator; GGDEF domain containing protein; KEGG: diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein.
 
 
0.852
Celf_0709
PFAM: MCP methyltransferase CheR-type; KEGG: jde:Jden_2001 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase CheR-type.
  
 0.804
Celf_2398
TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation protein E; PAS fold-3 domain protein; PAS fold-4 domain protein; GAF domain protein; KEGG: kra:Krad_0947 putative PAS/PAC sensor protein; SMART: protein phosphatase 2C domain protein; GAF domain protein; PAC repeat-containing protein; PAS domain containing protein.
 
 0.790
Celf_1596
KEGG: multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein.
   
 0.772
Celf_1595
KEGG: response regulator receiver modulated serine phosphatase; PFAM: Stage II sporulation protein E; response regulator receiver; SMART: response regulator receiver; protein phosphatase 2C domain protein.
  
 
 0.758
Celf_0783
KEGG: putative PAS/PAC sensor protein; PFAM: Stage II sporulation protein E; PAS fold-2 domain protein; GAF domain protein; Phytochrome central region domain protein; SMART: protein phosphatase 2C domain protein; GAF domain protein.
 
  
 0.737
Celf_2294
Diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: kra:Krad_4428 diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein.
 
 
0.737
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.