STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_3745PFAM: Domain of unknown function DUF1905; KEGG: kfl:Kfla_6584 domain of unknown function DUF1905. (101 aa)    
Predicted Functional Partners:
Celf_2543
PFAM: GCN5-related N-acetyltransferase; KEGG: bcv:Bcav_0290 GCN5-related protein N-acetyltransferase.
 
     0.842
Celf_3746
TIGRFAM: LPXTG-motif cell wall anchor domain protein; KEGG: sco:SCO0324 secreted protein.
       0.524
Celf_0382
PFAM: pentapeptide repeat protein; KEGG: nml:Namu_3823 pentapeptide repeat protein.
  
     0.485
Celf_3305
KEGG: bcv:Bcav_3763 YCII-related protein.
  
     0.477
Celf_3744
KEGG: protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight.
       0.460
Celf_3432
PFAM: peptidase S51 dipeptidase E; KEGG: kfl:Kfla_3190 peptidase S51 dipeptidase E; Belongs to the peptidase S51 family.
  
     0.434
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.