STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_3748KEGG: sma:SAV_6711 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. (331 aa)    
Predicted Functional Partners:
Celf_3749
PFAM: ABC-2 type transporter; KEGG: cwo:Cwoe_0966 ABC-2 type transporter.
    0.956
Celf_3208
PFAM: ABC-2 type transporter; KEGG: cwo:Cwoe_5654 ABC-2 type transporter.
  
 0.817
Celf_3715
PFAM: ABC-2 type transporter; KEGG: kfl:Kfla_5292 ABC-2 type transporter.
  
 0.788
Celf_1687
PFAM: ABC-2 type transporter; KEGG: ABC-type polysaccharide/polyol phosphate export systems, permease component.
     0.735
Celf_1239
PFAM: ABC-2 type transporter; KEGG: xce:Xcel_3137 ABC-2 type transporter.
 
    0.724
Celf_1684
PFAM: ABC-2 type transporter; KEGG: ami:Amir_1476 ABC-2 type transporter.
     0.719
Celf_1446
PFAM: ABC-2 type transporter; KEGG: aau:AAur_3851 putative ABC transporter, efflux permease protein.
  
 0.670
Celf_1066
PFAM: ABC-2 type transporter; KEGG: nml:Namu_2363 ABC-2 type transporter.
     0.625
Celf_3747
PFAM: transcriptional regulator PadR family protein; KEGG: bcv:Bcav_3549 transcriptional regulator, PadR-like family.
  
    0.480
Celf_1192
KEGG: amino acid ABC transporter membrane protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.
      0.464
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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