STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_3757PFAM: RelA/SpoT domain protein; KEGG: xce:Xcel_2232 RelA/SpoT domain protein. (246 aa)    
Predicted Functional Partners:
Celf_2024
(p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
 
  
 0.930
Celf_0848
TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; KEGG: anaerobic ribonucleoside-triphosphate reductase.
     
  0.900
ndk
Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
  0.900
Celf_1813
TIGRFAM: pyruvate kinase; KEGG: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; Belongs to the pyruvate kinase family.
     
  0.900
Celf_2387
KEGG: hypothetical protein.
     
  0.900
Celf_2838
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: adenylate/guanylate cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase.
     
 0.900
Celf_3020
PFAM: Ppx/GppA phosphatase; KEGG: Ppx/GppA phosphatase.
     
  0.900
Celf_3500
TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; KEGG: ribonucleoside-triphosphate reductase class III catalytic subunit; PFAM: formate C-acetyltransferase glycine radical; ATP-cone domain protein.
     
  0.900
folE
TIGRFAM: GTP cyclohydrolase I; KEGG: GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase.
     
  0.800
ribB
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
     
  0.800
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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