STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Celf_3772KEGG: transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI. (328 aa)    
Predicted Functional Partners:
Celf_1218
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bcv:Bcav_0036 periplasmic binding protein/LacI transcriptional regulator.
  
     0.771
Celf_2771
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bcv:Bcav_0036 periplasmic binding protein/LacI transcriptional regulator.
  
     0.762
Celf_0856
KEGG: ami:Amir_2923 regulatory protein DeoR; PFAM: regulatory protein DeoR; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein DeoR.
  
     0.744
Celf_1811
KEGG: glutamate synthase (ferredoxin); PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein.
    
 
 0.652
Celf_1927
Diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; periplasmic binding protein/LacI transcriptional regulator; GGDEF domain containing protein; KEGG: diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein.
  
     0.545
Celf_3770
KEGG: hypothetical protein.
       0.527
Celf_3771
KEGG: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.
       0.527
Your Current Organism:
Cellulomonas fimi
NCBI taxonomy Id: 590998
Other names: C. fimi ATCC 484, Cellulomonas fimi ATCC 484, Cellulomonas fimi DSM 20113, Cellulomonas fimi str. ATCC 484, Cellulomonas fimi strain ATCC 484
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.