Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ADB46506.1PFAM: Citrate transporter; KEGG: asu:Asuc_1303 citrate transporter. (440 aa)    
Predicted Functional Partners:
ADB46505.1
PFAM: aconitate hydratase domain protein; KEGG: hor:Hore_21050 aconitate hydratase.
       0.550
ADB47024.1
PFAM: Dicarboxylate carrier MatC domain protein; Citrate transporter; KEGG: aoe:Clos_0814 dicarboxylate carrier MatC domain-containing protein.
  
     0.459
ADB48315.1
PFAM: Dicarboxylate carrier MatC domain protein; KEGG: mmw:Mmwyl1_0970 dicarboxylate carrier MatC domain-containing protein.
  
     0.434
ADB48320.1
PFAM: Dicarboxylate carrier MatC domain protein; KEGG: efe:EFER_3664 hypothetical protein; putative membrane protein.
  
     0.410
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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