Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADB46512.1PFAM: AMMECR1 domain protein; Extradiol ring- cleavage dioxygenase class III protein subunit B; KEGG: shi:Shel_17380 hypothetical protein. (465 aa)    
Predicted Functional Partners:
ADB46511.1
PFAM: Radical SAM domain protein; KEGG: ele:Elen_1694 radical SAM domain protein.
 
     0.956
ADB46513.1
TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: dge:Dgeo_1556 phage SPO1 DNA polymerase- related protein.
 
     0.641
ADB47769.1
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cpy:Cphy_1553 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
     0.532
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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