Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADB46536.1PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; KEGG: bcv:Bcav_2432 peptidoglycan-binding LysM. (102 aa)    
Predicted Functional Partners:
ADB47942.1
PFAM: 3D domain protein; Peptidoglycan-binding domain 1 protein; KEGG: swo:Swol_0756 hypothetical protein.
  
  
 0.843
ADB47795.1
PFAM: 3D domain protein; G5 domain protein; protein of unknown function DUF348; KEGG: tpd:Teth39_2135 3D domain-containing protein.
  
  
 0.769
ADB48033.1
PFAM: OstA family protein; KEGG: lba:Lebu_2045 OstA family protein.
  
     0.757
ADB48215.1
KEGG: cpi:Cpin_2966 hypothetical protein.
  
     0.746
ADB48013.1
Hypothetical protein.
  
     0.740
ADB48053.1
PFAM: protein of unknown function DUF490; KEGG: amr:AM1_0074 hypothetical protein.
 
     0.738
ADB47622.1
KEGG: dvl:Dvul_2938 hypothetical protein.
  
     0.728
ADB46416.1
PFAM: protein of unknown function DUF721; KEGG: cef:CE0005 hypothetical protein.
  
     0.723
ADB48050.1
PFAM: outer membrane chaperone Skp (OmpH); KEGG: hypothetical protein.
  
     0.714
ADB46786.1
PFAM: Haemagluttinin domain protein; Hep_Hag repeat- containing protein; YadA domain protein; S-layer domain protein; KEGG: pmu:PM0714 Hsf.
  
    0.703
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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