Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADB46577.1PFAM: polysaccharide biosynthesis protein; multi antimicrobial extrusion protein MatE; KEGG: amt:Amet_0163 polysaccharide biosynthesis protein. (537 aa)    
Predicted Functional Partners:
ADB47281.1
PFAM: protein of unknown function DUF965; KEGG: hmo:HM1_0531 hypothetical protein.
  
     0.719
ADB47201.1
PFAM: protein of unknown function DUF633; KEGG: sth:STH597 hypothetical protein.
  
     0.664
ADB46658.1
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-H factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: chy:CHY_2333 RNA polymerase factor sigma-70.
  
    0.619
ADB48287.1
PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: chy:CHY_2316 ribosomal protein L7ae family protein.
  
    0.589
ADB46872.1
KEGG: sth:STH1468 hypothetical protein.
  
     0.583
ADB47049.1
KEGG: hor:Hore_16410 hypothetical protein.
  
     0.579
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
  
     0.574
ADB47943.1
PFAM: glutamine synthetase catalytic region; KEGG: cpf:CPF_2894 putative glutamine synthetase.
 
     0.571
ADB46431.1
PFAM: protein of unknown function DUF951; KEGG: cpy:Cphy_3775 hypothetical protein.
  
     0.570
polC
DNA polymerase III, alpha subunit; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
  
    0.565
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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