Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADB46585.1PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: mjl:Mjls_0759 extradiol ring-cleavage dioxygenase III subunit B. (263 aa)    
Predicted Functional Partners:
ADB46584.1
PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: dze:Dd1591_3247 alpha/beta hydrolase fold-3 domain protein.
       0.741
ADB46586.1
PFAM: Aldehyde Dehydrogenase; KEGG: sak:SAK_1211 aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
  
  
 0.551
ADB46583.1
PFAM: transcriptional regulator PadR family protein; KEGG: lpj:JDM1_2932 regulator of phenolic acid metabolism PadR.
       0.479
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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