Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADB46597.1Transcriptional regulator, GntR family with aminotransferase domain; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: bha:BH0578 GntR family transcriptional regulator. (450 aa)    
Predicted Functional Partners:
ADB46598.1
Hypothetical protein.
       0.535
ADB46599.1
PFAM: nitroreductase; KEGG: shi:Shel_04910 methylase involved in ubiquinone/menaquinone biosynthesis.
  
    0.524
atpB
H(+)-transporting two-sector ATPase; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit.
  
    0.514
atpA
H(+)-transporting two-sector ATPase; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.
       0.510
atpD
V-type ATPase, D subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
       0.510
ADB46593.1
PFAM: Vacuolar H+transporting two-sector ATPase F subunit; KEGG: cdf:CD2956A V-type ATP synthase subunit F.
  
    0.506
ADB46600.1
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cbk:CLL_A3210 tRNA uridine 5- carboxymethylaminomethyl modification enzyme GidA.
       0.464
ADB46592.1
PFAM: H+transporting two-sector ATPase C (AC39) subunit; KEGG: cbl:CLK_2013 V-type ATP synthase subunit C.
  
    0.457
ADB46601.1
Hypothetical protein.
       0.455
ADB46591.1
PFAM: H+transporting two-sector ATPase E subunit; KEGG: cth:Cthe_2264 H+-transporting two-sector ATPase, E subunit.
       0.453
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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