Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADB46614.1PFAM: peptidase dimerisation domain protein; peptidase M20; KEGG: cdf:CD2822 putative peptidase. (384 aa)    
Predicted Functional Partners:
ADB46615.1
PFAM: C4-dicarboxylate anaerobic carrier-like; KEGG: amt:Amet_0661 C4-dicarboxylate anaerobic carrier.
       0.703
ADB46682.1
PFAM: peptidase dimerisation domain protein; peptidase M20; KEGG: sth:STH1479 putative peptidase.
  
     0.668
ADB46612.1
PFAM: LrgA family protein; KEGG: ctc:CTC01825 putative murein hydrolase exporter.
       0.473
ADB46613.1
PFAM: LrgB family protein; KEGG: ele:Elen_2909 LrgB family protein.
       0.473
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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