Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADB46677.1TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: dat:HRM2_48490 outer membrane protein. (509 aa)    
Predicted Functional Partners:
ADB46678.1
PFAM: secretion protein HlyD family protein; KEGG: bbr:BB2383 HlyD family secretion protein.
 
 
 0.948
ADB46653.1
TIGRFAM: transporter, hydrophobe/amphiphile efflux- 1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: dsa:Desal_3289 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.943
ADB46652.1
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dma:DMR_04350 efflux system protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.888
ADB46679.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pag:PLES_25911 ATP-binding protein.
 
   
 0.851
ADB46681.1
PFAM: ABC-2 type transporter; KEGG: vap:Vapar_1738 ABC-2 type transporter.
 
   
 0.830
ADB46680.1
PFAM: ABC-2 type transporter; KEGG: nmu:Nmul_A1420 hypothetical protein.
 
   
 0.827
ADB46638.1
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ppd:Ppro_3233 RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.673
ADB46683.1
KEGG: sto:ST1078 hypothetical protein.
 
     0.497
ADB46682.1
PFAM: peptidase dimerisation domain protein; peptidase M20; KEGG: sth:STH1479 putative peptidase.
       0.466
ADB46676.1
KEGG: eel:EUBELI_00570 hypothetical protein.
       0.460
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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