Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADB46726.1PFAM: periplasmic binding protein; KEGG: cce:Ccel_3204 periplasmic binding protein. (318 aa)    
Predicted Functional Partners:
ADB46727.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nph:NP3818A corrinoid ABC transporter ATPase.
 
 
 0.970
ADB48141.1
PFAM: transport system permease protein; KEGG: cce:Ccel_3203 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.896
ADB46730.1
TIGRFAM: TonB family protein; KEGG: pca:Pcar_0453 TonB-like protein.
  
  
 0.826
ADB46728.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: ote:Oter_2347 MotA/TolQ/ExbB proton channel.
  
  
 0.815
ADB46729.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mno:Mnod_1396 protein TolR.
  
  
 0.812
ADB47249.1
KEGG: ere:EUBREC_0233 hypothetical protein.
  
 
 0.680
ADB46718.1
PFAM: protein of unknown function DUF116; KEGG: gbm:Gbem_0636 protein of unknown function DUF116.
 
     0.653
ADB46731.1
KEGG: bay:RBAM_036150 hypothetical protein.
 
     0.636
rlmN
Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
       0.603
ADB46721.1
KEGG: ele:Elen_3041 protein serine/threonine phosphatase; PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein.
       0.603
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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