Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADB46728.1PFAM: MotA/TolQ/ExbB proton channel; KEGG: ote:Oter_2347 MotA/TolQ/ExbB proton channel. (212 aa)    
Predicted Functional Partners:
ADB46729.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mno:Mnod_1396 protein TolR.
 
 
 0.997
ADB46730.1
TIGRFAM: TonB family protein; KEGG: pca:Pcar_0453 TonB-like protein.
 
 
 0.982
ADB46726.1
PFAM: periplasmic binding protein; KEGG: cce:Ccel_3204 periplasmic binding protein.
  
  
 0.815
ADB46727.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nph:NP3818A corrinoid ABC transporter ATPase.
  
  
 0.809
ADB48052.1
PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: hor:Hore_17680 surface antigen (D15).
  
   
 0.759
ADB48032.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dfe:Dfer_4049 ABC transporter related.
 
   
 0.754
ADB48031.1
PFAM: permease YjgP/YjgQ family protein; KEGG: gvi:gvip124 hypothetical protein.
  
     0.741
ADB48054.1
PFAM: outer membrane efflux protein; KEGG: dde:Dde_0961 outer membrane protein-like.
  
   
 0.729
ADB46912.1
PFAM: type II and III secretion system protein; Secretin/TonB short domain; KEGG: gem:GM21_2665 type IV pilus secretin PilQ; Belongs to the bacterial secretin family.
  
    0.726
lpxA
acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
  
 0.668
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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