Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADB46768.1TIGRFAM: metal dependent phophohydrolase; KEGG: cbi:CLJ_B0707 HDIG domain protein. (196 aa)    
Predicted Functional Partners:
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; t-RNA-binding domain protein; KEGG: fma:FMG_0987 lysyl-tRNA synthetase class II; Belongs to the class-II aminoacyl-tRNA synthetase family.
      0.897
ADB46769.1
PFAM: purine or other phosphorylase family 1; KEGG: eca:ECA0185 uridine phosphorylase.
       0.540
deoB
Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.
       0.538
ADB46771.1
Hypothetical protein.
       0.538
ADB46767.1
PFAM: protein of unknown function DUF1393; KEGG: cbt:CLH_1589 hypothetical protein.
       0.514
ADB46772.1
PFAM: zinc/iron permease; KEGG: apv:Apar_0715 zinc/iron permease.
       0.467
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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