Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
deoBPhosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. (406 aa)    
Predicted Functional Partners:
ADB46769.1
PFAM: purine or other phosphorylase family 1; KEGG: eca:ECA0185 uridine phosphorylase.
 
 
 0.959
ADB46827.1
KEGG: cdf:CD2320 ribose-5-phosphate isomerase 1; TIGRFAM: ribose 5-phosphate isomerase B; sugar- phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase.
     
 0.911
ADB46864.1
Transketolase; KEGG: pmx:PERMA_1704 transketolase; TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; Belongs to the transketolase family.
     
 0.911
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
     
 0.911
ADB47244.1
PFAM: NUDIX hydrolase; KEGG: bbe:BBR47_23760 ADP-ribose pyrophosphatase.
    
  0.902
ADB46771.1
Hypothetical protein.
       0.781
ADB46772.1
PFAM: zinc/iron permease; KEGG: apv:Apar_0715 zinc/iron permease.
       0.665
ADB47691.1
Purine or other phosphorylase family 1; Purine nucleoside phosphorylase involved in purine salvage.
  
  
 0.626
ADB46956.1
TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; PEP-utilising protein mobile region; KEGG: bbe:BBR47_13840 pyruvate kinase; Belongs to the pyruvate kinase family.
  
  
 0.625
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.553
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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