Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADB46790.1PFAM: conserved hypothetical protein; KEGG: avi:Avi_5192 hypothetical protein. (154 aa)    
Predicted Functional Partners:
ADB46787.1
Hypothetical protein.
       0.777
ADB46788.1
PFAM: lipase class 3; KEGG: DAD1; DAD1 (DEFECTIVE ANTHER DEHISCENCE 1); triacylglycerol lipase.
       0.777
ADB46789.1
PFAM: amidohydrolase 2; KEGG: bbe:BBR47_14510 hypothetical protein.
       0.777
ADB46791.1
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: efe:EFER_2240 colicin I receptor.
       0.773
ADB46888.1
PFAM: ROK family protein; KEGG: cdf:CD2236 putative glucokinase.
 
  
 0.497
ADB46786.1
PFAM: Haemagluttinin domain protein; Hep_Hag repeat- containing protein; YadA domain protein; S-layer domain protein; KEGG: pmu:PM0714 Hsf.
     
 0.415
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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