Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
ADB46791.1PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: efe:EFER_2240 colicin I receptor. (645 aa)    
Predicted Functional Partners:
ADB46730.1
TIGRFAM: TonB family protein; KEGG: pca:Pcar_0453 TonB-like protein.
 
 
 0.905
ADB46788.1
PFAM: lipase class 3; KEGG: DAD1; DAD1 (DEFECTIVE ANTHER DEHISCENCE 1); triacylglycerol lipase.
 
     0.798
ADB46787.1
Hypothetical protein.
       0.773
ADB46789.1
PFAM: amidohydrolase 2; KEGG: bbe:BBR47_14510 hypothetical protein.
       0.773
ADB46790.1
PFAM: conserved hypothetical protein; KEGG: avi:Avi_5192 hypothetical protein.
       0.773
ADB48054.1
PFAM: outer membrane efflux protein; KEGG: dde:Dde_0961 outer membrane protein-like.
  
   
 0.740
ADB48141.1
PFAM: transport system permease protein; KEGG: cce:Ccel_3203 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.671
ADB47686.1
PFAM: OmpA/MotB domain protein; porin opacity type; KEGG: vpa:VP0764 outer membrane protein OmpA.
  
   
 0.655
ADB46792.1
KEGG: vvy:VVA0425 coproporphyrinogen III oxidase.
 
   
 0.639
ADB46652.1
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dma:DMR_04350 efflux system protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   
 0.623
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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