close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADB46872.1KEGG: sth:STH1468 hypothetical protein. (135 aa)    
Predicted Functional Partners:
rimM
16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
       0.802
trmD
tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
       0.801
ADB46871.1
KEGG: ckr:CKR_1299 hypothetical protein; Belongs to the UPF0109 family.
       0.782
rpsP
TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: lsp:Bsph_1527 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
       0.761
ADB47897.1
Hypothetical protein; KEGG: dau:Daud_0847 copper amine oxidase domain- containing protein.
  
     0.751
ADB48049.1
PFAM: outer membrane chaperone Skp (OmpH); KEGG: hor:Hore_17650 outer membrane chaperone Skp (OmpH).
  
     0.722
ADB48053.1
PFAM: protein of unknown function DUF490; KEGG: amr:AM1_0074 hypothetical protein.
  
     0.706
ADB48034.1
PFAM: protein of unknown function DUF1239; KEGG: cyh:Cyan8802_4032 protein of unknown function DUF1239.
  
     0.705
ADB46957.1
PFAM: acyltransferase 3; KEGG: aoe:Clos_0058 acyltransferase 3.
  
     0.702
ADB46917.1
KEGG: mta:Moth_2335 hypothetical protein.
  
     0.694
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.