Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
ADB46880.1KEGG: pth:PTH_1690 ATPase; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; SMART: AAA ATPase. (507 aa)    
Predicted Functional Partners:
ADB46879.1
PFAM: protein of unknown function UPF0102; KEGG: hor:Hore_07400 conserved hypothetical protein TIGR00252; Belongs to the UPF0102 family.
 
  
 0.872
ADB47612.1
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: tro:trd_1601 probable smf protein.
 
 0.841
ADB46881.1
PFAM: peptidase A24A domain protein; Fimbrial assembly family protein; KEGG: cpo:COPRO5265_1030 leader peptidase PilD.
     
 0.771
ADB46882.1
Hypothetical protein.
       0.761
ADB47825.1
KEGG: tgr:Tgr7_0129 competence protein F.
 
  
 0.643
ADB47813.1
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; KEGG: dae:Dtox_3303 DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.614
ADB46883.1
PFAM: aminotransferase class I and II; KEGG: cdf:CD2382 putative aspartate aminotransferase.
       0.526
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
  
   
 0.491
ADB46884.1
KEGG: ctc:CTC00344 uridine kinase.
       0.488
rnhB
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.469
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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