Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADB46883.1PFAM: aminotransferase class I and II; KEGG: cdf:CD2382 putative aspartate aminotransferase. (418 aa)    
Predicted Functional Partners:
pgk
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
   
 
 0.940
ADB46884.1
KEGG: ctc:CTC00344 uridine kinase.
 
  
 0.793
ADB46885.1
PFAM: aminotransferase class I and II; KEGG: amt:Amet_2618 aspartate aminotransferase.
  
 
 0.698
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
 
 
    0.680
ADB47943.1
PFAM: glutamine synthetase catalytic region; KEGG: cpf:CPF_2894 putative glutamine synthetase.
  
 
 0.599
ADB46881.1
PFAM: peptidase A24A domain protein; Fimbrial assembly family protein; KEGG: cpo:COPRO5265_1030 leader peptidase PilD.
       0.536
ADB46882.1
Hypothetical protein.
       0.536
ADB46880.1
KEGG: pth:PTH_1690 ATPase; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; SMART: AAA ATPase.
       0.526
ADB46834.1
PFAM: Chorismate mutase, type II; KEGG: cli:Clim_2513 chorismate mutase.
     
 0.513
ADB47965.1
PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: ckr:CKR_0706 hypothetical protein.
     
 0.513
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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