Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ADB46912.1PFAM: type II and III secretion system protein; Secretin/TonB short domain; KEGG: gem:GM21_2665 type IV pilus secretin PilQ; Belongs to the bacterial secretin family. (405 aa)    
Predicted Functional Partners:
ADB46914.1
PFAM: type II secretion system protein E; KEGG: dac:Daci_1299 general secretory pathway protein E.
 
  
 0.886
ADB47655.1
PFAM: Type II secretion system F domain; KEGG: dar:Daro_0638 type II secretion system protein.
 
  
 0.779
ADB46913.1
KEGG: nfa:nfa5130 hypothetical protein.
       0.777
ADB46728.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: ote:Oter_2347 MotA/TolQ/ExbB proton channel.
  
    0.726
ADB48052.1
PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: hor:Hore_17680 surface antigen (D15).
  
     0.698
ADB46729.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mno:Mnod_1396 protein TolR.
  
     0.694
ADB48054.1
PFAM: outer membrane efflux protein; KEGG: dde:Dde_0961 outer membrane protein-like.
  
  
 0.663
ADB48031.1
PFAM: permease YjgP/YjgQ family protein; KEGG: gvi:gvip124 hypothetical protein.
  
     0.639
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
  
     0.614
ADB48058.1
KEGG: hor:Hore_17720 hypothetical protein.
  
     0.591
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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