Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ADB46997.1PFAM: YbbR family protein; KEGG: mta:Moth_2247 YbbR-like. (322 aa)    
Predicted Functional Partners:
dacA
Protein of unknown function DUF147; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria; Belongs to the adenylate cyclase family. DacA/CdaA subfamily.
 
  
 0.935
ADB46998.1
PFAM: FAD dependent oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: gme:Gmet_2676 FAD dependent oxidoreductase.
       0.784
ADB46450.1
PFAM: Protein of unknown function DUF2232, membrane; KEGG: chy:CHY_0038 hypothetical protein.
  
     0.595
ADB46995.1
TIGRFAM: amidohydrolase; PFAM: peptidase M20; KEGG: apr:Apre_0497 amidohydrolase.
       0.522
ADB46999.1
Inorganic diphosphatase; PFAM: DHHA2 domain protein; phosphoesterase RecJ domain protein; KEGG: cac:CAC2138 putative manganese-dependent inorganic pyrophosphatase.
       0.492
ADB47000.1
Hypothetical protein.
       0.463
ADB47660.1
PFAM: Polypeptide-transport-associated domain protein FtsQ-type; KEGG: pth:PTH_1855 cell division septal protein.
  
     0.435
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.409
ADB46836.1
KEGG: sca:Sca_2326 hypothetical protein.
  
     0.405
ADB48013.1
Hypothetical protein.
 
     0.400
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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