Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ADB47104.1PFAM: histidine triad (HIT) protein; KEGG: cpf:CPF_2281 HIT family protein. (111 aa)    
Predicted Functional Partners:
cobB
Silent information regulator protein Sir2; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.
  
 
  0.769
ADB47103.1
RNA modification enzyme, MiaB family; KEGG: drm:Dred_2492 RNA modification protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB- like tRNA modifying enzyme; PFAM: Protein of unknown function UPF0004; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
   0.759
ADB47943.1
PFAM: glutamine synthetase catalytic region; KEGG: cpf:CPF_2894 putative glutamine synthetase.
  
   0.732
ADB47102.1
Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
     
 0.731
prmA
Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
       0.726
ADB46884.1
KEGG: ctc:CTC00344 uridine kinase.
   
 0.708
rpsU
TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; KEGG: sth:STH514 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
    0.623
ADB47106.1
PFAM: Protein of unknown function; KEGG: hmo:HM1_2443 GatB/YqeY domain protein.
     
 0.527
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; t-RNA-binding domain protein; KEGG: fma:FMG_0987 lysyl-tRNA synthetase class II; Belongs to the class-II aminoacyl-tRNA synthetase family.
   
 0.489
ADB47100.1
Hypothetical protein; KEGG: rce:RC1_0943 the GLUG motif domain protein, putative.
  
    0.447
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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