Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADB47106.1PFAM: Protein of unknown function; KEGG: hmo:HM1_2443 GatB/YqeY domain protein. (149 aa)    
Predicted Functional Partners:
rpsU
TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; KEGG: sth:STH514 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
  
 0.946
ADB47107.1
PFAM: aminotransferase class I and II; KEGG: cac:CAC2832 aspartate aminotransferase.
       0.541
ADB47104.1
PFAM: histidine triad (HIT) protein; KEGG: cpf:CPF_2281 HIT family protein.
     
 0.527
ADB47102.1
Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
     
 0.492
ADB47103.1
RNA modification enzyme, MiaB family; KEGG: drm:Dred_2492 RNA modification protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB- like tRNA modifying enzyme; PFAM: Protein of unknown function UPF0004; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
    0.491
prmA
Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
       0.473
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
   
    0.469
rpmE
Ribosomal protein L31; Binds the 23S rRNA.
   
    0.411
hrcA
Heat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.
 
     0.401
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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