Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADB47123.1PFAM: S23 ribosomal protein; KEGG: fjo:Fjoh_0743 S23 ribosomal protein. (117 aa)    
Predicted Functional Partners:
ADB46914.1
PFAM: type II secretion system protein E; KEGG: dac:Daci_1299 general secretory pathway protein E.
  
 
 0.601
ADB47813.1
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; KEGG: dae:Dtox_3303 DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.585
ADB47655.1
PFAM: Type II secretion system F domain; KEGG: dar:Daro_0638 type II secretion system protein.
  
  
 0.576
ADB48113.1
KEGG: nth:Nther_2075 hydrolase (HAD superfamily).
  
  
 0.546
ADB47402.1
PFAM: peptidase A24A prepilin type IV; KEGG: pth:PTH_1144 type II secretory pathway, prepilin signal peptidase PulO and related peptidases.
 
  
 0.464
ADB47612.1
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: tro:trd_1601 probable smf protein.
 
  
 0.416
ADB47122.1
KEGG: ere:EUBREC_2761 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like.
       0.415
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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