Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADB47178.1TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: bbr:BB4169 hypothetical protein. (273 aa)    
Predicted Functional Partners:
ADB47541.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rru:Rru_A0789 binding-protein dependent transport system inner membrane protein.
 0.982
ADB46671.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: yen:YE4182 ABC transporter permease.
 0.980
metN-2
ABC transporter related protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
 0.976
metN
ABC transporter related protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
 0.975
ADB47179.1
Gly-Xaa carboxypeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: vap:Vapar_2924 peptidase M20.
       0.708
ADB47180.1
Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.705
ADB47181.1
KEGG: scl:sce0884 hypothetical protein.
       0.435
ADB47184.1
KEGG: lac:LBA0469 hypothetical protein.
  
 
 0.433
ADB47177.1
KEGG: eel:EUBELI_20055 formate C-acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: pyruvate formate-lyase PFL; formate C- acetyltransferase glycine radical.
       0.415
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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