Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADB47184.1KEGG: lac:LBA0469 hypothetical protein. (439 aa)    
Predicted Functional Partners:
ADB47183.1
KEGG: lga:LGAS_1558 hypothetical protein.
 
     0.953
ADB47185.1
PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: lga:LGAS_1556 Lhr-like helicase.
 
     0.947
ADB47186.1
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bad:BAD_0632 MATE efflux family protein.
       0.677
ADB46671.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: yen:YE4182 ABC transporter permease.
  
 
 0.655
ADB47541.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rru:Rru_A0789 binding-protein dependent transport system inner membrane protein.
  
 
 0.655
ADB47182.1
PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: dvl:Dvul_2201 pyridoxamine kinase; Belongs to the pyridoxine kinase family.
 
     0.587
metAA
Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
  
    0.437
ADB46672.1
PFAM: NLPA lipoprotein; KEGG: bld:BLi03178 hypothetical protein.
  
 
 0.433
ADB47086.1
TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: tpd:Teth39_1334 YaeC family lipoprotein; Belongs to the nlpA lipoprotein family.
  
 
 0.433
ADB47178.1
TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: bbr:BB4169 hypothetical protein.
  
 
 0.433
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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