Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADB47213.1PFAM: protein of unknown function DUF6 transmembrane; KEGG: cac:CAC1045 permease. (309 aa)    
Predicted Functional Partners:
ADB47214.1
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dhd:Dhaf_4885 glyoxalase/bleomycin resistance protein/dioxygenase.
       0.740
mscL
Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.
     
 0.717
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
       0.563
ADB47211.1
PFAM: protein of unknown function DUF964; KEGG: ate:Athe_0692 protein of unknown function DUF964; Belongs to the UPF0342 family.
       0.561
ADB47626.1
PFAM: protein of unknown function DUF6 transmembrane; KEGG: drm:Dred_1505 hypothetical protein.
  
     0.537
tyrS
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.
       0.521
ADB47210.1
PFAM: peptidase M15D vanX D-ala-D-ala dipeptidase; KEGG: sus:Acid_7552 peptidase M15D, VanX D-ala-D- ala dipeptidase.
 
   
 0.449
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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