Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ADB47281.1PFAM: protein of unknown function DUF965; KEGG: hmo:HM1_0531 hypothetical protein. (87 aa)    
Predicted Functional Partners:
ADB47282.1
Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
 
    0.958
ADB47283.1
PFAM: protein of unknown function DUF1292; KEGG: hmo:HM1_0534 hypothetical protein.
       0.818
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.
       0.784
ADB47285.1
PFAM: peptidase U32; KEGG: cce:Ccel_1474 peptidase U32.
       0.782
ADB47201.1
PFAM: protein of unknown function DUF633; KEGG: sth:STH597 hypothetical protein.
  
     0.755
ADB46868.1
Putative helix-turn-helix protein YlxM/p13 family protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
     0.746
ADB46431.1
PFAM: protein of unknown function DUF951; KEGG: cpy:Cphy_3775 hypothetical protein.
  
     0.735
ADB47976.1
PFAM: polysaccharide biosynthesis protein; multi antimicrobial extrusion protein MatE; KEGG: swo:Swol_0081 stage V sporulation protein B.
  
     0.729
ADB46577.1
PFAM: polysaccharide biosynthesis protein; multi antimicrobial extrusion protein MatE; KEGG: amt:Amet_0163 polysaccharide biosynthesis protein.
  
     0.719
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
  
     0.650
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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