Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADB47411.1PFAM: protein of unknown function DUF6 transmembrane; KEGG: cdf:CD2829 hypothetical protein. (306 aa)    
Predicted Functional Partners:
ADB47412.1
KEGG: amt:Amet_2923 hypothetical protein.
 
     0.773
ADB47410.1
PFAM: peptidase C1B bleomycin hydrolase; KEGG: lpj:JDM1_0540 cysteine aminopeptidase; Belongs to the peptidase C1 family.
       0.523
ADB47413.1
PFAM: Uncharacterised conserved protein UCP037246; KEGG: ere:EUBREC_1717 hypothetical protein.
       0.437
ADB47087.1
Putative plasmid maintenance system antidote protein, XRE family; KEGG: sgo:SGO_0562 helix-turn-helix domain- containing protein.
  
     0.418
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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