Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADB47464.1KEGG: det:DET1102 hypothetical protein. (382 aa)    
Predicted Functional Partners:
ADB47463.1
KEGG: det:DET1101 hypothetical protein.
 
     0.947
ADB47465.1
KEGG: hmo:HM1_2933 hypothetical protein.
     0.946
ADB47462.1
PFAM: DNA-directed DNA polymerase; SMART: DNA-directed DNA polymerase; KEGG: det:DET1100 family A DNA-dependent DNA polymerase.
 
     0.905
ADB47454.1
PFAM: SNF2-related protein; SMART: DEAD-like helicase; KEGG: det:DET1096 SNF2 domain-containing protein.
 
     0.783
ADB47455.1
PFAM: VRR-NUC domain protein; KEGG: det:DET1097 hypothetical protein.
 
     0.783
ADB47500.1
KEGG: hmo:HM1_2935 hypothetical protein.
 
     0.780
ADB47502.1
KEGG: bca:BCE_0374 rRNA biogenesis protein rrp5, putative.
     0.780
ADB47498.1
PFAM: DNA-directed DNA polymerase; SMART: DNA-directed DNA polymerase; KEGG: det:DET1100 family A DNA-dependent DNA polymerase.
 
     0.779
ADB47466.1
Hypothetical protein.
       0.773
ADB47444.1
KEGG: hmo:HM1_2958 phage terminase, large subunit, putative.
  
     0.755
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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