Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
ADB47476.1PFAM: DNA methylase N-4/N-6 domain protein; KEGG: rci:LRC82 putative type III restriction- modification system, methylation subunit. (855 aa)    
Predicted Functional Partners:
ADB47475.1
KEGG: cya:CYA_1293 putative type III restriction- modification system, res subunit.
 
   
 0.949
ADB47477.1
PFAM: NUDIX hydrolase; Protein of unknown function DUF2075; KEGG: lba:Lebu_0123 hypothetical protein.
       0.526
ADB47474.1
KEGG: cpy:Cphy_1511 hypothetical protein.
       0.468
ADB47681.1
PFAM: type III restriction protein res subunit; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: pjd:Pjdr2_0293 type III restriction protein res subunit.
 
   
 0.429
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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