Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADB47477.1PFAM: NUDIX hydrolase; Protein of unknown function DUF2075; KEGG: lba:Lebu_0123 hypothetical protein. (742 aa)    
Predicted Functional Partners:
ADB46651.1
KEGG: bbe:BBR47_47820 hypothetical protein.
  
     0.541
ADB47475.1
KEGG: cya:CYA_1293 putative type III restriction- modification system, res subunit.
       0.526
ADB47476.1
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: rci:LRC82 putative type III restriction- modification system, methylation subunit.
       0.526
ADB48018.1
PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: hypothetical protein.
  
     0.503
ADB46786.1
PFAM: Haemagluttinin domain protein; Hep_Hag repeat- containing protein; YadA domain protein; S-layer domain protein; KEGG: pmu:PM0714 Hsf.
  
     0.494
ADB47622.1
KEGG: dvl:Dvul_2938 hypothetical protein.
  
     0.484
ADB46834.1
PFAM: Chorismate mutase, type II; KEGG: cli:Clim_2513 chorismate mutase.
  
     0.479
ADB47911.1
KEGG: vha:VIBHAR_p08196 hypothetical protein.
  
     0.457
ADB46683.1
KEGG: sto:ST1078 hypothetical protein.
  
     0.443
ADB46836.1
KEGG: sca:Sca_2326 hypothetical protein.
  
     0.433
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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