STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADB47517.1PFAM: Resolvase domain; Recombinase; KEGG: spa:M6_Spy1125 site-specific recombinase. (432 aa)    
Predicted Functional Partners:
ADB47449.1
PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; SMART: ParB domain protein nuclease; KEGG: hmo:HM1_2946 DNA methylase; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.830
ADB47448.1
KEGG: det:DET1091 virulence-related protein.
 
   
 0.759
ADB47459.1
KEGG: hmo:HM1_2897 hypothetical protein.
  
     0.732
ADB47450.1
KEGG: tex:Teth514_1242 hypothetical protein.
  
    0.729
ADB47451.1
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: det:DET1094 HNH endonuclease domain- containing protein.
 
    0.719
ADB47458.1
KEGG: sak:SAK_0730 prophage LambdaSa04, DNA primase.
 
  
 0.716
ADB47457.1
TIGRFAM: phage/plasmid primase, P4 family; PFAM: primase P4; KEGG: sak:SAK_0730 prophage LambdaSa04, DNA primase.
 
  
 0.714
ADB47446.1
KEGG: ckr:CKR_3419 hypothetical protein.
  
    0.693
ADB47444.1
KEGG: hmo:HM1_2958 phage terminase, large subunit, putative.
 
     0.685
ADB47447.1
KEGG: det:DET1090 hypothetical protein.
  
    0.679
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.