STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADB47523.1PFAM: protein of unknown function DUF891; KEGG: ere:EUBREC_3676 hypothetical protein. (122 aa)    
Predicted Functional Partners:
ADB47524.1
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ere:EUBREC_3677 hypothetical protein.
 
 
 0.978
ADB47443.1
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ere:EUBREC_3010 hypothetical protein.
 
 
 0.861
ADB47516.1
PFAM: S-layer domain protein; YadA domain protein; Haemagluttinin domain protein; Hep_Hag repeat-containing protein; KEGG: pmu:PM0714 Hsf.
  
     0.580
ADB48385.1
TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: fma:FMG_1585 hypothetical protein.
 
     0.484
ADB47324.1
TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: apv:Apar_0511 addiction module antitoxin, RelB/DinJ family.
 
     0.456
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.