Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADB47744.1PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dol:Dole_1501 radical SAM domain-containing protein. (332 aa)    
Predicted Functional Partners:
ADB47743.1
PFAM: Threonyl/alanyl tRNA synthetase SAD; phosphoesterase DHHA1; KEGG: chl:Chy400_3264 threonyl/alanyl tRNA synthetase SAD.
  
    0.784
ADB47745.1
TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; KEGG: ere:EUBREC_2380 branched-chain-amino-acid transaminase (IlvE).
       0.486
ADB47697.1
PFAM: PP-loop domain protein; SMART: Rhodanese domain protein; KEGG: ere:EUBREC_1362 putative ATPase of the PP- loop superfamily implicated in cell cycle control; Belongs to the TtcA family.
  
 
 0.456
tilS
tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
  
 
 0.434
rpsB
TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: drm:Dred_1978 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
  
    0.429
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
   0.410
ADB47033.1
PFAM: Methyltransferase type 11; KEGG: cdf:CD3547 hypothetical protein.
  
     0.402
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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