Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpmFTIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: cno:NT01CX_2222 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (60 aa)    
Predicted Functional Partners:
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
   
 
 0.994
rpsB
TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: drm:Dred_1978 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
  
 0.993
rplL
Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
  
 0.992
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 0.991
rpmB
TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: aoe:Clos_1438 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
 
 
 0.990
rpmI
TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: ter:Tery_1881 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
  
 
 0.989
rpsP
TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: lsp:Bsph_1527 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.988
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 0.987
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
   
 
 0.987
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 0.986
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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