Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADB47912.1Response regulator receiver protein; PFAM: LytTr DNA-binding region; KEGG: dhd:Dhaf_1994 two component transcriptional regulator, LytTR family. (235 aa)    
Predicted Functional Partners:
ADB46442.1
Hypothetical protein; KEGG: dhd:Dhaf_2424 signal transduction histidine kinase regulating citrate/malate metabolism.
 
  
 0.667
ADB47910.1
KEGG: cth:Cthe_1459 hypothetical protein.
 
     0.575
ADB47911.1
KEGG: vha:VIBHAR_p08196 hypothetical protein.
 
     0.570
ADB46443.1
Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: dhd:Dhaf_2425 two component transcriptional regulator, LytTR family.
  
     0.490
Your Current Organism:
Acidaminococcus fermentans
NCBI taxonomy Id: 591001
Other names: A. fermentans DSM 20731, Acidaminococcus fermentans DSM 20731, Acidaminococcus fermentans str. DSM 20731, Acidaminococcus fermentans strain DSM 20731
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